PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1069
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 489aa    MW: 53846.2 Da    PI: 9.9001
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1069genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00069121143123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H + +
  Gh_A07G1069 121 WKCEKCSKKYAVQSDWKAHSKIC 143
                  58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-4109142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MMSPDGLSIP STVKGLAQAQ QPNPNPNPNP VKKKRNFPGT PGKSRCRGYS FVPKISHGDQ  60
QIPLRGHNLP WKLKQRTNKE VRKKVYICPE KTCVHHDPSR ALGDLTGIKK HFSRKHGEKK  120
WKCEKCSKKY AVQSDWKAHS KICGTREYRC DCGTLFSRKD SFITHRAFCD ALAEESARFT  180
SVSTNVNPAA ASFRNDLIHG ANNNGMHQFS SGFRPEFGGL ELVDNLNSNG QNPRLQLWLD  240
EANNPFGIPS NTNAFLAPKS TSFPDLGMAP MNMFGSLTTH WLGKYPEDAS FAGANLNMSA  300
LRQGPKQEEE NKGDLSESIT SLYSNNSLQQ QQQQNHTHMS ATALLQKAAQ MGSTRNNPAI  360
NNSGFGLISS NTYDQNKNHV YKLFKQTNDQ SDNINELVSS LSSNQAAIVK DGSALDDLKS  420
SSFVRNASSK GKQGDQAVVL ASKLNNTNSN EVESSLTRDF LGVGGESSRP LLQQELAKFA  480
SMGSIHPWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17183KLKQRTNKEVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.150520.0boll| embryo| leaf| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5271851e-133HQ527185.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GHRJ2 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477895.10.0PREDICTED: protein indeterminate-domain 9-like
TrEMBLA0A0D2PY830.0A0A0D2PY83_G
STRINGVIT_06s0004g03070.t011e-165(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.18e-72C2H2-like zinc finger protein